PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29704.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 278aa    MW: 30429.6 Da    PI: 4.9771
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29704.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.7e-3181139259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++ +tY++eHnh+
  mrna29704.1-v1.0-hybrid  81 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTMLMVTYSSEHNHP 139
                              69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-3273141IPR003657WRKY domain
SuperFamilySSF1182906.15E-2777141IPR003657WRKY domain
SMARTSM007741.7E-3780140IPR003657WRKY domain
PROSITE profilePS5081132.37481141IPR003657WRKY domain
PfamPF031061.7E-2682139IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGSPTFFNKH FMSDIDHDDY NTATTSTPEN SSGSPPPPPA FNDVVYSKIA SSPKKSSRRA  60
IQKRVVSIPI KENSNTNTPP SDSWAWRKYG QKPIKGSPYP RGYYRCSSSK GCPARKQVER  120
SRADPTMLMV TYSSEHNHPW PASRSHHGAK PQTKTEVREE EEEETAAAQP EPDPEERRFA  180
DLGGDEEPAL VIIPSAADEF GWFAADMETT SSRVLESPIF TESGGPDFGD VAGMVFPMGE  240
EDESLFADLG ELPECSFVFR HRRVGGGGGV GPQVQIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-19811411574WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004295586.20.0PREDICTED: probable WRKY transcription factor 65 isoform X1
SwissprotQ9LP562e-78WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLM5WGZ21e-109M5WGZ2_PRUPE; Uncharacterized protein
STRINGPOPTR_0011s06990.11e-82(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.16e-76WRKY DNA-binding protein 65